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CHIEFSOFT\ameye
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE data SYSTEM "../../../lib/pkp/dtd/xmlData.dtd">
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<!--
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* dbscripts/xml/upgrade/3.2.0_versioning.xml
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*
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* Copyright (c) 2013-2021 Simon Fraser University
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* Copyright (c) 2003-2021 John Willinsky
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* Distributed under the GNU GPL v3. For full terms see the file docs/COPYING.
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*
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* Copy submission data to temporary tables so it can be updated
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* after the publication table modifications are made.
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*
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-->
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<data>
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<sql>
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<!-- change date_published from datetime to date before migrating -->
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<query driver="mysql,mysqli">ALTER TABLE temp_published_submissions MODIFY COLUMN date_published DATE NULL</query>
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<query driver="postgres,postgres64,postgres7,postgres8,postgres9">ALTER TABLE temp_published_submissions ALTER COLUMN date_published TYPE DATE</query>
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<!-- migrate data to new publications table -->
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<query>
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INSERT INTO publications (access_status, date_published, last_modified, locale, section_id, seq, submission_id, status, version)
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SELECT COALESCE(ps.access_status, 0), COALESCE(ps.date_published, NULL), s.last_modified, s.locale, s.section_id, COALESCE(ps.seq, 0), s.submission_id, s.status, 1
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FROM temp_submissions as s
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LEFT JOIN temp_published_submissions as ps
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ON (s.submission_id = ps.submission_id)
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GROUP BY s.submission_id, ps.access_status, ps.date_published, s.last_modified, s.section_id, ps.seq, s.locale, s.status;
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</query>
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<query>
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UPDATE publications as p
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SET primary_contact_id = (
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SELECT a.author_id
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FROM temp_authors as a
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WHERE a.submission_id = p.submission_id
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AND a.primary_contact = 1
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LIMIT 1
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)
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</query>
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<!-- set the current_publication_id column in submissions -->
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<query>
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UPDATE submissions as s
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SET current_publication_id = (
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SELECT p.publication_id
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FROM publications as p
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WHERE s.submission_id = p.submission_id
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)
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</query>
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<!-- migrate submission_settings to publication_settings -->
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<query>
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INSERT INTO publication_settings(publication_id, locale, setting_name, setting_value)
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SELECT s.current_publication_id, ss.locale, ss.setting_name, ss.setting_value
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FROM submissions as s
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LEFT JOIN submission_settings as ss
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ON (ss.submission_id = s.submission_id)
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WHERE (
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setting_name IN ('abstract', 'cleanTitle', 'copyrightHolder', 'copyrightYear', 'coverage', 'coverImage', 'licenseUrl', 'locale', 'prefix', 'rights', 'source', 'subtitle', 'title', 'type')
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OR setting_name LIKE '%pub-id%'
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)
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</query>
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<query>
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DELETE FROM submission_settings
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WHERE (
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setting_name IN ('abstract', 'cleanTitle', 'copyrightHolder', 'copyrightYear', 'coverage', 'coverImage', 'coverImageAltText', 'licenseUrl', 'locale', 'prefix', 'rights', 'source', 'subtitle', 'title', 'type')
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OR setting_name LIKE '%pub-id%'
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)
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</query>
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<!-- migrate some data from submissions to publication_settings -->
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<query>
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INSERT INTO publication_settings(publication_id, setting_name, setting_value)
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SELECT s.current_publication_id, 'language', ts.language
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FROM submissions as s
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LEFT JOIN temp_submissions as ts
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ON s.submission_id = ts.submission_id
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WHERE ts.language != ''
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</query>
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<query>
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INSERT INTO publication_settings(publication_id, setting_name, setting_value)
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SELECT s.current_publication_id, 'citationsRaw', ts.citations
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FROM submissions as s
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LEFT JOIN temp_submissions as ts
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ON s.submission_id = ts.submission_id
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WHERE ts.citations IS NOT NULL
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</query>
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<query>
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INSERT INTO publication_settings(publication_id, setting_name, setting_value)
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SELECT s.current_publication_id, 'pages', ts.pages
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FROM submissions as s
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LEFT JOIN temp_submissions as ts
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ON s.submission_id = ts.submission_id
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WHERE ts.pages IS NOT NULL
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</query>
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<query>
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INSERT INTO publication_settings(publication_id, setting_name, setting_value)
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SELECT s.current_publication_id, 'hide_author', ts.hide_author
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FROM submissions as s
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LEFT JOIN temp_submissions as ts
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ON s.submission_id = ts.submission_id
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WHERE ts.hide_author IS NOT NULL
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</query>
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<!-- migrate issue_id from published_submissions to publication settings -->
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<query>
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INSERT INTO publication_settings(publication_id, setting_name, setting_value)
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SELECT s.current_publication_id, 'issueId', ps.issue_id
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FROM temp_published_submissions as ps
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LEFT JOIN submissions as s
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ON ps.submission_id = s.submission_id
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WHERE s.current_publication_id IS NOT NULL
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</query>
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<!-- move some author data to settings table -->
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<query driver="postgres,postgres64,postgres7,postgres8,postgres9">ALTER TABLE author_settings ALTER COLUMN setting_type DROP NOT NULL</query>
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<query>
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INSERT INTO author_settings(author_id, setting_name, setting_value)
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SELECT ta.author_id, 'country', ta.country
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FROM temp_authors as ta
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</query>
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<query>
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INSERT INTO author_settings(author_id, setting_name, setting_value)
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SELECT ta.author_id, 'url', ta.url
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FROM temp_authors as ta
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WHERE ta.url IS NOT NULL
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</query>
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<!-- connect authors to publications -->
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<query driver="postgres,postgres64,postgres7,postgres8,postgres9">
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UPDATE authors
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SET publication_id = s.current_publication_id
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FROM submissions s, temp_authors ta
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WHERE authors.author_id = ta.author_id AND s.submission_id = ta.submission_id
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</query>
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<query driver="mysql,mysqli">
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UPDATE authors as a
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SET a.publication_id = (
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SELECT s.current_publication_id
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FROM submissions as s
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LEFT JOIN temp_authors as ta
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ON s.submission_id = ta.submission_id
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WHERE a.author_id = ta.author_id
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)
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</query>
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<!-- move submission_galleys to publication_galleys -->
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<query>
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INSERT INTO publication_galleys(galley_id, locale, publication_id, label, file_id, seq, remote_url, is_approved)
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SELECT tsg.galley_id, tsg.locale, s.current_publication_id, tsg.label, tsg.file_id, tsg.seq, tsg.remote_url, 1
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FROM submissions as s, temp_submission_galleys as tsg
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WHERE s.submission_id = tsg.submission_id
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</query>
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<query>
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INSERT INTO publication_galley_settings(galley_id, locale, setting_name, setting_value)
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SELECT tsgs.galley_id, tsgs.locale, tsgs.setting_name, tsgs.setting_value
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FROM submission_galley_settings as tsgs
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WHERE tsgs.galley_id IS NOT NULL
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</query>
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<!-- connect controlled vocab metadata to publications, 1048585 = ASSOC_TYPE_SUBMISSION, 1048588 = ASSOC_TYPE_PUBLICATION -->
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<query driver="postgres,postgres64,postgres7,postgres8,postgres9">
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UPDATE controlled_vocabs
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SET assoc_type = 1048588, assoc_id = s.current_publication_id
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FROM submissions s
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WHERE assoc_type = 1048585 AND assoc_id = s.submission_id
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</query>
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<query driver="mysql,mysqli">
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UPDATE controlled_vocabs AS cv,
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submissions AS s
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SET cv.assoc_type = 1048588, cv.assoc_id = s.current_publication_id
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WHERE cv.assoc_type = 1048585 AND s.submission_id = cv.assoc_id
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</query>
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<!-- connect citations to publications -->
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<!-- To avoid collisions per pkp/pkp-lib#5795, first flip to negative, then clean up. -->
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<query driver="postgres,postgres64,postgres7,postgres8,postgres9">
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UPDATE citations
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SET publication_id = -s.current_publication_id
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FROM submissions s
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JOIN temp_citations as tc ON (s.submission_id = tc.submission_id)
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WHERE citations.citation_id = tc.citation_id
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</query>
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<query driver="postgres,postgres64,postgres7,postgres8,postgres9"><![CDATA[
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UPDATE citations SET publication_id = -publication_id WHERE publication_id < 0
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]]></query>
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<query driver="mysql,mysqli">
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UPDATE citations as c
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SET c.publication_id = (
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SELECT s.current_publication_id
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FROM submissions as s
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JOIN temp_citations as tc ON s.submission_id = tc.submission_id
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WHERE c.citation_id = tc.citation_id
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) ORDER BY c.publication_id ASC
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</query>
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<!-- update the DOI setting names -->
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<query>
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UPDATE plugin_settings
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SET setting_name='doiPublicationSuffixPattern'
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WHERE setting_name='doiSubmissionSuffixPattern'
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AND plugin_name='doipubidplugin'
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</query>
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<query>
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UPDATE plugin_settings
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SET setting_name='enablePublicationDoi'
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WHERE setting_name='enableSubmissionDoi'
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AND plugin_name='doipubidplugin'
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</query>
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<!-- update the URN setting names -->
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<query>
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UPDATE plugin_settings
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SET setting_name='urnPublicationSuffixPattern'
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WHERE setting_name='urnSubmissionSuffixPattern'
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AND plugin_name='urnpubidplugin'
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</query>
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<query>
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UPDATE plugin_settings
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SET setting_name='enablePublicationURN'
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WHERE setting_name='enableSubmissionURN'
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AND plugin_name='urnpubidplugin'
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</query>
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<!--
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pkp/pkp-lib#7266 Assigned articles missing from future issues after upgrade to OJS 3.3.0-8
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Constants:
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- STATUS_SCHEDULED = 5
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- WORKFLOW_STAGE_ID_EDITING = 4
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- WORKFLOW_STAGE_ID_PRODUCTION = 5
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-->
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<query driver="postgres,postgres64,postgres7,postgres8,postgres9">
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UPDATE publications as p
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SET status = 5
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WHERE ctid IN (
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SELECT p.ctid
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FROM publications as p
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LEFT JOIN publication_settings as pss ON p.publication_id = pss.publication_id
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LEFT JOIN submissions as s ON p.submission_id = s.submission_id
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WHERE pss.setting_name = 'issueId'
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AND pss.setting_value IS NOT NULL
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AND p.status = 1
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AND s.stage_id IN (4, 5)
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)
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</query>
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<query driver="postgres,postgres64,postgres7,postgres8,postgres9">
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UPDATE "submissions" as "s"
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SET "status" = 5
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WHERE "ctid" IN (
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SELECT "s"."ctid"
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FROM "submissions" as "s"
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LEFT JOIN "publications" as "p" ON "s"."submission_id" = "p"."submission_id"
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LEFT JOIN "publication_settings" as "pss" ON "p"."publication_id" = "pss"."publication_id"
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WHERE "pss"."setting_name" = 'issueId'
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AND "pss"."setting_value" IS NOT NULL
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AND "s"."status" = 1
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AND "s"."stage_id" IN (4,5)
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)
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</query>
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<query driver="mysql,mysqli">
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UPDATE publications as p
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LEFT JOIN publication_settings as pss ON p.publication_id = pss.publication_id
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LEFT JOIN submissions as s ON p.submission_id = s.submission_id
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SET p.status = 5, s.status = 5
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WHERE pss.setting_name = 'issueId'
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AND pss.setting_value IS NOT NULL
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AND p.status = 1
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AND s.stage_id in (4, 5)
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</query>
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<!-- remove deprecated and temporary tables. should be last commands -->
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<drop table="submission_galleys" />
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<drop table="submission_galley_settings" />
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<drop table="published_submissions" />
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<drop table="temp_authors" />
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<drop table="temp_submissions" />
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<drop table="temp_submission_galleys" />
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<drop table="temp_published_submissions" />
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<drop table="temp_citations" />
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</sql>
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</data>
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