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CHIEFSOFT\ameye
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<?php
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/**
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* @file api/v1/dois/DoiHandler.php
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*
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* Copyright (c) 2014-2021 Simon Fraser University
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* Copyright (c) 2003-2021 John Willinsky
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* Distributed under the GNU GPL v3. For full terms see the file docs/COPYING.
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*
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* @class DoiHandler
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*
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* @ingroup api_v1_dois
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*
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* @brief Handle API requests for DOI operations.
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*
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*/
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namespace APP\API\v1\dois;
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use APP\facades\Repo;
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use APP\issue\Issue;
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use APP\jobs\doi\DepositIssue;
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use PKP\context\Context;
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use PKP\core\APIResponse;
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use PKP\doi\Doi;
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use PKP\doi\exceptions\DoiException;
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use PKP\security\Role;
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use Slim\Http\Request as SlimRequest;
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use Slim\Http\Response;
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class DoiHandler extends \PKP\API\v1\dois\PKPDoiHandler
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{
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/**
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* Constructor
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*/
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public function __construct()
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{
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$this->_handlerPath = 'dois';
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$this->_endpoints = array_merge_recursive($this->_endpoints, [
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'POST' => [
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[
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'pattern' => $this->getEndpointPattern() . '/issues/assignDois',
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'handler' => [$this, 'assignIssueDois'],
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'roles' => [Role::ROLE_ID_MANAGER, Role::ROLE_ID_SITE_ADMIN]
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]
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],
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'PUT' => [
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[
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'pattern' => $this->getEndpointPattern() . '/issues/export',
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'handler' => [$this, 'exportIssues'],
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'roles' => [Role::ROLE_ID_MANAGER, Role::ROLE_ID_SITE_ADMIN],
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],
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[
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'pattern' => $this->getEndpointPattern() . '/issues/deposit',
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'handler' => [$this, 'depositIssues'],
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'roles' => [Role::ROLE_ID_MANAGER, Role::ROLE_ID_SITE_ADMIN],
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],
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[
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'pattern' => $this->getEndpointPattern() . '/issues/markRegistered',
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'handler' => [$this, 'markIssuesRegistered'],
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'roles' => [Role::ROLE_ID_MANAGER, Role::ROLE_ID_SITE_ADMIN],
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],
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[
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'pattern' => $this->getEndpointPattern() . '/issues/markUnregistered',
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'handler' => [$this, 'markIssuesUnregistered'],
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'roles' => [Role::ROLE_ID_MANAGER, Role::ROLE_ID_SITE_ADMIN],
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],
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[
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'pattern' => $this->getEndpointPattern() . '/issues/markStale',
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'handler' => [$this, 'markIssuesStale'],
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'roles' => [Role::ROLE_ID_MANAGER, Role::ROLE_ID_SITE_ADMIN],
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],
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],
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]);
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parent::__construct();
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}
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/**
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* Export XML for configured DOI registration agency
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*/
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public function exportIssues(SlimRequest $slimRequest, APIResponse $response, array $args): Response
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{
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// Retrieve and validate issues
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$requestIds = $slimRequest->getParsedBody()['ids'] ?? [];
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if (!count($requestIds)) {
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return $response->withStatus(404)->withJsonError('api.dois.404.noPubObjectIncluded');
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}
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$context = $this->getRequest()->getContext();
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$validIds = Repo::issue()
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->getCollector()
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->filterByContextIds([$context->getId()])
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->filterByPublished(true)
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->getIds()
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->toArray();
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$invalidIds = array_diff($requestIds, $validIds);
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if (count($invalidIds)) {
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return $response->withStatus(400)->withJsonError('api.dois.400.invalidPubObjectIncluded');
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}
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/** @var Issue[] $issues */
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$issues = [];
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foreach ($requestIds as $id) {
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$issues[] = Repo::issue()->get($id);
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}
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if (empty($issues[0])) {
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return $response->withStatus(404)->withJsonError('api.dois.404.doiNotFound');
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}
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$agency = $context->getConfiguredDoiAgency();
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if ($agency === null) {
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return $response->withStatus(400)->withJsonError('api.dois.400.noRegistrationAgencyConfigured');
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}
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// Invoke IDoiRegistrationAgency::exportIssues
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$responseData = $agency->exportIssues($issues, $context);
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if (!empty($responseData['xmlErrors'])) {
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return $response->withStatus(400)->withJsonError('api.dois.400.xmlExportFailed');
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}
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return $response->withJson(['temporaryFileId' => $responseData['temporaryFileId']], 200);
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}
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/**
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* Deposit XML for configured DOI registration agency
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*/
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public function depositIssues(SlimRequest $slimRequest, APIResponse $response, array $args): Response
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{
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// Retrieve and validate issues
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$requestIds = $slimRequest->getParsedBody()['ids'] ?? [];
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if (!count($requestIds)) {
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return $response->withStatus(404)->withJsonError('api.dois.404.noPubObjectIncluded');
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}
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$context = $this->getRequest()->getContext();
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$validIds = Repo::issue()
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->getCollector()
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->filterByContextIds([$context->getId()])
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->filterByPublished(true)
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->getIds()
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->toArray();
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$invalidIds = array_diff($requestIds, $validIds);
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if (count($invalidIds)) {
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return $response->withStatus(400)->withJsonError('api.dois.400.invalidPubObjectIncluded');
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}
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$agency = $context->getConfiguredDoiAgency();
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if ($agency === null) {
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return $response->withStatus(400)->withJsonError('api.dois.400.noRegistrationAgencyConfigured');
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}
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$doisToUpdate = [];
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foreach ($requestIds as $issueId) {
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dispatch(new DepositIssue($issueId, $context, $agency));
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array_merge($doisToUpdate, Repo::doi()->getDoisForIssue($issueId));
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}
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Repo::doi()->markSubmitted($doisToUpdate);
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return $response->withStatus(200);
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}
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/**
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* Mark submission DOIs as registered with a DOI registration agency.
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*/
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public function markIssuesRegistered(SlimRequest $slimRequest, APIResponse $response, array $args): Response
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{
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// Retrieve issues
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$requestIds = $slimRequest->getParsedBody()['ids'] ?? [];
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if (!count($requestIds)) {
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return $response->withStatus(404)->withJsonError('api.dois.404.noPubObjectIncluded');
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}
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$context = $this->getRequest()->getContext();
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$validIds = Repo::issue()
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->getCollector()
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->filterByContextIds([$context->getId()])
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->filterByPublished(true)
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->getIds()
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->toArray();
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$invalidIds = array_diff($requestIds, $validIds);
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if (count($invalidIds)) {
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$failedDoiActions = array_map(function (int $id) {
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$issueTitle = Repo::issue()->get($id)?->getIssueIdentification() ?? 'Issue not found';
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return new DoiException(DoiException::ISSUE_NOT_PUBLISHED, $issueTitle, $issueTitle);
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}, $invalidIds);
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return $response->withJson(
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[
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'failedDoiActions' => array_map(
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function (DoiException $item) {
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return $item->getMessage();
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},
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$failedDoiActions
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)
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],
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400
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);
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}
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foreach ($requestIds as $id) {
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$doiIds = Repo::doi()->getDoisForIssue($id);
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foreach ($doiIds as $doiId) {
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Repo::doi()->markRegistered($doiId);
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}
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}
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return $response->withStatus(200);
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}
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/**
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* Mark issues DOIs as no longer registered with a DOI registration agency.
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*/
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public function markIssuesUnregistered(SlimRequest $slimRequest, APIResponse $response, array $args): Response
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{
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// Retrieve issues
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$requestIds = $slimRequest->getParsedBody()['ids'] ?? [];
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if (!count($requestIds)) {
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return $response->withStatus(404)->withJsonError('api.dois.404.noPubObjectIncluded');
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}
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$context = $this->getRequest()->getContext();
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$validIds = Repo::issue()
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->getCollector()
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->filterByContextIds([$context->getId()])
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->getIds()
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->toArray();
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$invalidIds = array_diff($requestIds, $validIds);
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if (count($invalidIds)) {
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$failedDoiActions = array_map(function (int $id) {
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$issueTitle = Repo::issue()->get($id)?->getIssueIdentification() ?? 'Issue not found';
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return new DoiException(DoiException::INCORRECT_ISSUE_CONTEXT, $issueTitle, $issueTitle);
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}, $invalidIds);
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return $response->withJson(
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[
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'failedDoiActions' => array_map(
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function (DoiException $item) {
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return $item->getMessage();
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},
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$failedDoiActions
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)
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],
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400
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);
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}
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foreach ($requestIds as $id) {
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$doiIds = Repo::doi()->getDoisForIssue($id);
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foreach ($doiIds as $doiId) {
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Repo::doi()->markUnregistered($doiId);
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}
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}
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return $response->withStatus(200);
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}
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/**
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* Mark submission DOIs as stale, indicating a need to be resubmitted to registration agency with updated metadata.
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*/
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public function markIssuesStale(SlimRequest $slimRequest, APIResponse $response, array $args): Response
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{
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// Retrieve issues
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$requestIds = $slimRequest->getParsedBody()['ids'] ?? [];
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if (!count($requestIds)) {
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return $response->withStatus(404)->withJsonError('api.dois.404.noPubObjectIncluded');
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}
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$context = $this->getRequest()->getContext();
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$validIds = Repo::issue()
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->getCollector()
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->filterByContextIds([$context->getId()])
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->filterByPublished(true)
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// Items can only be considered stale if they have been deposited/queued for deposit in the first place
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->filterByDoiStatuses([Doi::STATUS_SUBMITTED, Doi::STATUS_REGISTERED])
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->getIds()
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->toArray();
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$invalidIds = array_diff($requestIds, $validIds);
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if (count($invalidIds)) {
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$failedDoiActions = array_map(function (int $id) {
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$issueTitle = Repo::issue()->get($id)?->getIssueIdentification() ?? 'Issue not found';
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return new DoiException(DoiException::INCORRECT_STALE_STATUS, $issueTitle, $issueTitle);
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}, $invalidIds);
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return $response->withJson(
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[
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'failedDoiActions' => array_map(
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function (DoiException $item) {
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return $item->getMessage();
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},
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$failedDoiActions
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)
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],
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400
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);
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}
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foreach ($requestIds as $id) {
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$doiIds = Repo::doi()->getDoisForIssue($id);
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Repo::doi()->markStale($doiIds);
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}
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return $response->withStatus(200);
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}
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/**
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* Assign DOIs to issue
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*/
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public function assignIssueDois(SlimRequest $slimRequest, APIResponse $response, array $args): Response
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{
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// Retrieve issues
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$ids = $slimRequest->getParsedBody()['ids'] ?? [];
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if (!count($ids)) {
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return $response->withStatus(404)->withJsonError('api.issue.404.issuesNotFound');
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}
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$context = $this->getRequest()->getContext();
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$doiPrefix = $context->getData(Context::SETTING_DOI_PREFIX);
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if (empty($doiPrefix)) {
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return $response->withStatus(403)->withJsonError('api.dois.403.prefixRequired');
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}
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$failedDoiActions = [];
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// Assign DOIs
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foreach ($ids as $id) {
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$issue = Repo::issue()->get($id);
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if ($issue !== null) {
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$creationFailureResults = Repo::issue()->createDoi($issue);
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$failedDoiActions = array_merge($failedDoiActions, $creationFailureResults);
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}
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}
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if (!empty($failedDoiActions)) {
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return $response->withJson(
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[
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'failedDoiActions' => array_map(
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function (DoiException $item) {
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return $item->getMessage();
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},
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$failedDoiActions
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)
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],
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400
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);
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}
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return $response->withJson(['failedDoiActions' => $failedDoiActions], 200);
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}
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/**
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* @copydoc PKPDoiHandler::getPubObjectHandler()
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*/
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protected function getPubObjectHandler(string $type): mixed
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{
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$handler = parent::getPubObjectHandler($type);
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if ($handler !== null) {
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return $handler;
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}
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return match ($type) {
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Repo::doi()::TYPE_ISSUE => Repo::issue(),
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default => null,
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};
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}
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}
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